PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002279G0250
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 272aa    MW: 28733 Da    PI: 7.9788
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002279G0250genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-183989155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     + ++GVr++  +g+WvAeIr+p   + r +r +lg+f ta +Aa+a++aa+++l+g
  PH01002279G0250 39 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFSTALDAARAYDAAARALYG 89
                     679****999.**********8...3.35***********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-3140103IPR001471AP2/ERF domain
PROSITE profilePS5103220.7054097IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-194197IPR016177DNA-binding domain
CDDcd000182.56E-164172No hitNo description
PRINTSPR003671.9E-94152IPR001471AP2/ERF domain
PfamPF008478.5E-124189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-284196IPR001471AP2/ERF domain
PRINTSPR003671.9E-96379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MASSSNGKGK QQSSKKCCPL RRSRKGCMKG KGGPENQRCP FRGVRQRTWG KWVAEIREPN  60
RGARLWLGTF STALDAARAY DAAARALYGD CARLNVSASG SPSPDTTAGL QPRPPHINIS  120
TAAGGAGGGH HQYKPSAPGT PCCSADASSN SNSNSNSNSS VTMGGSPTDN NSVSMAMRTE  180
TTQYGMNTMQ MTREEAAEEF EAYVTRLPKA EDFGLEGFQE VLDEAGGGIG IWDLTICPDM  240
MPAASTPPPK QQPDMVVDDA GLQPQSQPLA W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-144195358ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1081434e-88AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence.
GenBankAP0046234e-88AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05.
GenBankAP0054114e-88AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16.
GenBankAP0149644e-88AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3393754e-88AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds.
GenBankCP0126164e-88CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651102.13e-78PREDICTED: dehydration-responsive element-binding protein 2C
SwissprotQ84ZA16e-80DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLA0A0E0EP683e-78A0A0E0EP68_9ORYZ; Uncharacterized protein
STRINGLOC_Os08g45110.19e-78(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-28ERF family protein